Pubblicazioni

NetworkCommons: bridging data, knowledge, and methods to build and evaluate context-specific biological networks

2025 - BIOINFORMATICS

Paton, Victor; TÃ¼rei, Denes; Ivanova, Olga; MÃ¼ller-Dott, Sophia; Rodriguez-Mier, Pablo; Venafra, Veronica; Perfetto, Livia; Garrido-Rodriguez, Martin; Saez-Rodriguez, Julio

Geometric epitope and paratope prediction

2024 - BIOINFORMATICS

Pegoraro, Marco; DominÃ©, ClÃ©mentine; RodolÃ , Emanuele; VeliÄkoviÄ, Petar; Deac, Andreea

Evaluating homophily in networks via HONTO (HOmophily Network TOol): a case study of chromosomal interactions in human PPI networks

2023 - BIOINFORMATICS

Apollonio, N.; Blankenberg, D.; Cumbo, F.; Franciosa, P. G.; Santoni, D.

The PRALINE database: protein and Rna humAn singLe nucleotIde variaNts in condEnsates

2023 - BIOINFORMATICS

Vandelli, Andrea; Arnal Segura, Magdalena; Monti, Michele; Fiorentino, Jonathan; Broglia, Laura; Colantoni, Alessio; Sanchez de Groot, Natalia; Torrent Burgas, Marc; Armaos, Alexandros; Tartaglia, Gian Gaetano

NIAPU: Network-Informed Adaptive Positive-Unlabeled learning for disease gene identification

2023 - BIOINFORMATICS

Stolfi, Paola; Mastropietro, Andrea; Pasculli, Giuseppe; Vergni, Davide; Tieri, Paolo

XGDAG: explainable geneâdisease associations via graph neural networks

2023 - BIOINFORMATICS

Mastropietro, Andrea; DE CARLO, Gianluca; Anagnostopoulos, Aris

PyPCN: protein contact networks in PyMOL

2023 - BIOINFORMATICS

Rosignoli, Serena; DI PAOLA, Luisa; Paiardini, Alessandro

The Power of Word-Frequency Based Alignment-Free Functions: a Comprehensive Large-Scale Experimental Analysis

2022 - BIOINFORMATICS

Cattaneo, Giuseppe; Ferraro Petrillo, Umberto; Giancarlo, Raffaele; Palini, Francesco; Romualdi, Chiara

SWIMmeR: An R-based software to unveiling crucial nodes in complex biological networks

2022 - BIOINFORMATICS

Paci, P.; Fiscon, G.

Thermometer: a webserver to predict protein thermal stability

2022 - BIOINFORMATICS

Miotto, Mattia; Armaos, Alexandros; Di Rienzo, Lorenzo; Ruocco, Giancarlo; Milanetti, Edoardo; Tartaglia, Gian Gaetano

DockingPie: a consensus docking plugin for PyMOL

2022 - BIOINFORMATICS

Rosignoli, Serena; Paiardini, Alessandro

Biological Random Walks: multi-omics integration for disease gene prioritization

2022 - BIOINFORMATICS

Gentili, Michele; Martini, Leonardo; Sponziello, Marialuisa; Becchetti, Luca

SIGNORApp: a Cytoscape 3 application to access SIGNOR data

2022 - BIOINFORMATICS

De Marinis, I; Lo Surdo, P; Cesareni, G; Perfetto, L

CellVGAE: An unsupervised scRNA-seq analysis workflow with graph attention networks

2022 - BIOINFORMATICS

Buterez, D.; Bica, I.; Tariq, I.; Andres-Terre, H.; Lio, P.

Adversarial generation of gene expression data

2022 - BIOINFORMATICS

Vinas, R.; Andres-Terre, H.; Lio, P.; Bryson, K.

Unsupervised construction of computational graphs for gene expression data with explicit structural inductive biases

2022 - BIOINFORMATICS

Scherer, P.; Trebacz, M.; Simidjievski, N.; Vinas, R.; Shams, Z.; Terre, H. A.; Jamnik, M.; Lio, P.

Complete populations of virtual patients for in silico clinical trials

2021 - BIOINFORMATICS

Sinisi, S; Alimguzhin, V; Mancini, T; Tronci, E; Leeners, B

Alignment-free Genomic Analysis via a Big Data Spark Platform

2021 - BIOINFORMATICS

Ferraro Petrillo, Umberto; Palini, Francesco; Cattaneo, Giuseppe; Giancarlo, Raffaele

NaViA: A Program for the Visual Analysis of Complex Mass Spectra

2021 - BIOINFORMATICS

Quetschlich, Daniel; Esser, Tim K; Newport, Thomas D; Fiorentino, Francesco; Shutin, Denis; Chen, Siyun; Davis, Rachel; Lovera, Silvia; Liko, Idlir; Stansfeld, Phillip J; Robinson, Carol V