Pubblicazioni

SPINNAKER: an R-based tool to highlight key RNA interactions in complex biological networks

2022 - BMC BIOINFORMATICS

Paci, P.; Fiscon, G.

StaRTrEK:in silico estimation of RNA half-lives from genome-wide time-course experiments without transcriptional inhibition

2022 - BMC BIOINFORMATICS

Conte, F.; Papa, F.; Paci, P.; Farina, L.

DIAMIN: a software library for the distributed analysis of large-scale molecular interaction networks

2022 - BMC BIOINFORMATICS

Di Rocco, Lorenzo; Ferraro Petrillo, Umberto; Rombo, Simona E

FASTA/Q data compressors for MapReduce-Hadoop genomics: space and time savings made easy

2021 - BMC BIOINFORMATICS

Ferraro Petrillo, Umberto; Palini, Francesco; Cattaneo, Giuseppe; Giancarlo, Raffaele

SAveRUNNER: an R-based tool for drug repurposing

2021 - BMC BIOINFORMATICS

Fiscon, G.; Paci, P.

adabmDCA: adaptive Boltzmann machine learning for biological sequences

2021 - BMC BIOINFORMATICS

Muntoni, Ap; Pagnani, A; Weigt, M; Zamponi, F

Advantages of using graph databases to explore chromatin conformation capture experiments

2021 - BMC BIOINFORMATICS

D'Agostino, D.; Lio, P.; Aldinucci, M.; Merelli, I.

Analysis of single-cell RNA sequencing data based on autoencoders

2021 - BMC BIOINFORMATICS

Tangherloni, A.; Ricciuti, F.; Besozzi, D.; Lio, P.; Cvejic, A.

ISeqQC: A tool for expression-based quality control in RNA sequencing

2020 - BMC BIOINFORMATICS

Kumar, G.; Ertel, A.; Feldman, G.; Kupper, J.; Fortina, P.

Analyzing big datasets of genomic sequences: fast and scalable collection of k-mer statistics

2019 - BMC BIOINFORMATICS

Ferraro Petrillo, Umberto; Sorella, Mara; Cattaneo, Giuseppe; Giancarlo, Raffaele; Rombo, Simona E

MIENTURNET: An interactive web tool for microRNA-target enrichment and network-based analysis

2019 - BMC BIOINFORMATICS

Licursi, V.; Conte, F.; Fiscon, G.; Paci, P.

SWIM tool application to expression data of glioblastoma stem-like cell lines, corresponding primary tumors and conventional glioma cell lines

2018 - BMC BIOINFORMATICS

Giulia, Fiscon; Federica, Conte; PACI, P

FC_analysis: a tool for investigating atomic force microscopy maps of force curves

2018 - BMC BIOINFORMATICS

Dinarelli, Simone; Girasole, Marco; Longo, Giovanni

TCGA2BED: Extracting, extending, integrating, and querying The Cancer Genome Atlas

2017 - BMC BIOINFORMATICS

Cumbo, F.; Fiscon, G.; Ceri, S.; Masseroli, M.; Weitschek, E.

Statistical ensemble of gene regulatory networks of macrophage differentiation

2016 - BMC BIOINFORMATICS

Castiglione, F.; Tieri, P.; Palma, A.; Jarrah, A. S.

Finite mixture clustering of human tissues with different levels of IGF-1 splice variants mRNA transcripts

2015 - BMC BIOINFORMATICS

Pelosi, M.; Alfo', Marco; Martella, Francesca; Pappalardo, E.; Musaro', Antonio

Preface: bits2014, the annual meeting of the italian society of bioinformatics

2015 - BMC BIOINFORMATICS

Facchiano, A; Angelini, C; Bosotti, R; Guffanti, A; Marabotti, A; Marangoni, R; Pascarella, Stefano; Romano, P; Zanzoni, A; Helmer Citterich, M.