genomics

Single cell analysis to dissect molecular heterogeneity and disease evolution in metastatic melanoma

Originally described as interpatient variability, tumour heterogeneity has now been demonstrated to occur intrapatiently, within the same lesion, or in different lesions of the same patient. Tumour heterogeneity involves both genetic and epigenetic changes. Intrapatient heterogeneity is responsible for generating subpopulations of cancer cells which undergo clonal evolution with time. Tumour heterogeneity develops also as a consequence of the selective pressure imposed by the immune system.

An integrated approach to the recovery of travertine biodegradation by combining phyto-cleaning with genomic characterization

Travertine is a sedimentary carbonate rock widely used in Roman arts and frequently subjected to biodeterioration. In this preliminary multi-analytical study, three essential oils (EOs) from T. vulgaris, O. vulgare, C. nepeta and their respective phenolic major components (thymol, carvacrol, pulegone) were selected to evaluate their biocidal potential against a multi-species biofilm grown on a travertine test wall located inside Sapienza University Campus in Rome. A preliminary characterization of the biofilm occurred through the employment of genomic methodologies.

Genomics of Klebsiella pneumoniae ST16 producing NDM-1, CTX-M-15, and OXA-232

Objectives: Genomic characterization of the internationally spread sequence type (ST) 16 carbapenem-resistant Klebsiella pneumoniae. Methods: The complete genomes of three carbapenem producing ST16 K. pneumoniae from Italian patients were analysed by single-nucleotide polymorphism-based phylogeny, core genome multilocus sequence typing, resistance, plasmid, and virulence content and compared with ten genomes of ST16 strains isolated in other countries. Plasmids carrying bla NDM-1 or bla OXA-232 carbapenemase genes were assembled and sequences were analysed.

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