Recontructing paleoenvironments: Metabarcoding and shotgun sequencing Italian vulcanic lake sediments

We are using the metabarcoding tecnique on sedimentary DNA (sedDNA) from three volcanic Italian lakes: Lago Grande di Monticchio, Lago di Nemi, and Lago di Martignano. At Monticchio, we have already identified over 100 plant taxa from a long sediment core covering the period from 1.4 to 30 thousand years before present. To maximize our results, we have developed new strategies to improve DNA extraction from mineral-adsorbed samples and counteract PCR inhibition. We are also testing hybdization capture and designed new probes to capture short DNA sequences belonging to multiple taxa using Next geneation sequencing.

Responsabile del Gruppo

Laura Parducci

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