Mattia Miotto | Ricerc@Sapienza

Pubblicazioni

Titolo	Pubblicato in	Anno
Compact assessment of molecular surface complementarities enhances neural network-aided prediction of key binding residues	JOURNAL OF CHEMICAL INFORMATION AND MODELING	2025
Ligand specificity in Saccaromices cerevisiae G-Protein coupled receptor binding site design	PHILOSOPHICAL MAGAZINE	2025
Exploring neural networks to uncover information-richer features for protein interaction prediction	EUROPEAN BIOPHYSICS JOURNAL	2025
Zepyros: a webserver to evaluate the shape complementarity of protein–protein interfaces	BIOINFORMATICS ADVANCES	2025
Design of protein-binding peptides with controlled binding affinity: the case of SARS-CoV-2 receptor binding domain and angiotensin-converting enzyme 2 derived peptides	FRONTIERS IN MOLECULAR BIOSCIENCES	2024
Computational evidences of a misfolding event in an aggregation‐prone light chain preceding the formation of the non‐native pathogenic dimer	PROTEINS	2024
Two Receptor Binding Strategy of SARS-CoV-2 Is Mediated by Both the N-Terminal and Receptor-Binding Spike Domain	JOURNAL OF PHYSICAL CHEMISTRY. B, CONDENSED MATTER, MATERIALS, SURFACES, INTERFACES & BIOPHYSICAL	2024
Computational Approaches to Predict Protein–Protein Interactions in Crowded Cellular Environments	CHEMICAL REVIEWS	2024
High-throughput interactome determination via sulfur anomalous scattering	THE JOURNAL OF PHYSICAL CHEMISTRY LETTERS	2024
A size-dependent division strategy accounts for leukemia cell size heterogeneity	COMMUNICATIONS PHYSICS	2024
Fast prediction of anharmonic vibrational spectra for complex organic molecules	NPJ COMPUTATIONAL MATERIALS	2024
Osmolyte-induced protein stability changes explained by graph theory	COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL	2024
Investigating the competition between ACE2 natural molecular interactors and SARS-CoV-2 candidate inhibitors	CHEMICO-BIOLOGICAL INTERACTIONS	2023
Electrostatic complementarity at the interface drives transient protein-protein interactions	SCIENTIFIC REPORTS	2023
Collective behavior and self-organization in neural rosette morphogenesis	FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY	2023
Dynamical changes of SARS-CoV-2 spike variants in the highly immunogenic regions impact the viral antibodies escaping	PROTEINS	2023
Computational models of dopamine release measured by fast scan cyclic voltammetry in vivo	PNAS NEXUS	2023
Molecular dynamics analysis of superoxide dismutase 1 mutations suggests decoupling between mechanisms underlying ALS onset and progression	COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL	2023
Differences in the organization of interface residues tunes the stability of the SARS-CoV-2 spike-ACE2 complex	FRONTIERS IN MOLECULAR BIOSCIENCES	2023
Computational structural-based GPCR optimization for user-defined ligand: Implications for the development of biosensors	COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL	2023