Lorenzo Di Rienzo | Ricerc@Sapienza

Pubblicazioni

Titolo	Pubblicato in	Anno
Compact assessment of molecular surface complementarities enhances neural network-aided prediction of key binding residues	JOURNAL OF CHEMICAL INFORMATION AND MODELING	2025
Ligand specificity in Saccaromices cerevisiae G-Protein coupled receptor binding site design	PHILOSOPHICAL MAGAZINE	2025
Exploring neural networks to uncover information-richer features for protein interaction prediction	EUROPEAN BIOPHYSICS JOURNAL	2025
Exploring the NANOG-TET2 interaction interface. Effects of a selected mutation and hypothesis on the clinical correlation with anemias	FRONTIERS IN CHEMICAL BIOLOGY	2025
Zepyros: a webserver to evaluate the shape complementarity of protein–protein interfaces	BIOINFORMATICS ADVANCES	2025
Design of protein-binding peptides with controlled binding affinity: the case of SARS-CoV-2 receptor binding domain and angiotensin-converting enzyme 2 derived peptides	FRONTIERS IN MOLECULAR BIOSCIENCES	2024
Computational evidences of a misfolding event in an aggregation‐prone light chain preceding the formation of the non‐native pathogenic dimer	PROTEINS	2024
Two Receptor Binding Strategy of SARS-CoV-2 Is Mediated by Both the N-Terminal and Receptor-Binding Spike Domain	JOURNAL OF PHYSICAL CHEMISTRY. B, CONDENSED MATTER, MATERIALS, SURFACES, INTERFACES & BIOPHYSICAL	2024
Computational Approaches to Predict Protein–Protein Interactions in Crowded Cellular Environments	CHEMICAL REVIEWS	2024
Investigating the competition between ACE2 natural molecular interactors and SARS-CoV-2 candidate inhibitors	CHEMICO-BIOLOGICAL INTERACTIONS	2023
Electrostatic complementarity at the interface drives transient protein-protein interactions	SCIENTIFIC REPORTS	2023
Dynamical changes of SARS-CoV-2 spike variants in the highly immunogenic regions impact the viral antibodies escaping	PROTEINS	2023
Molecular dynamics analysis of superoxide dismutase 1 mutations suggests decoupling between mechanisms underlying ALS onset and progression	COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL	2023
Differences in the organization of interface residues tunes the stability of the SARS-CoV-2 spike-ACE2 complex	FRONTIERS IN MOLECULAR BIOSCIENCES	2023
Binding site identification of G protein-coupled receptors through a 3D Zernike polynomials-based method: application to C. elegans olfactory receptors	JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN	2022
Inferring the stabilization effects of SARS-CoV-2 variants on the binding with ACE2 receptor	COMMUNICATIONS BIOLOGY	2022
Thermometer: a webserver to predict protein thermal stability	BIOINFORMATICS	2022
Lactoferrin inhibition of the complex formation between ACE2 receptor and SARS CoV-2 recognition binding domain	INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES	2022
Spatial organization of hydrophobic and charged residues affects protein thermal stability and binding affinity	SCIENTIFIC REPORTS	2022
A novel computational strategy for defining the minimal protein molecular surface representation	PLOS ONE	2022