Pubblicazioni

Deciphering Social Behaviour: a Novel Biological Approach For Social Users Classification

2025 - SAC '25: Proceedings of the 40th ACM/SIGAPP Symposium on Applied Computing

Allegrini, Edoardo; Di Paolo, Edoardo; Petrocchi, Marinella; Spognardi, Angelo

Towards parsimonious generative modeling of RNA families

2024 - NUCLEIC ACIDS RESEARCH

Calvanese, Francesco; N Lambert, Camille; Nghe, Philippe; Zamponi, Francesco; Weigt, Martin

Unlearning regularization for Boltzmann machines

2024 - MACHINE LEARNING: SCIENCE AND TECHNOLOGY

Ventura, Enrico; Cocco, Simona; Monasson, RÃ©mi; Zamponi, Francesco

SHELLEY: Exploring Learning-Based Network Alignment on Biological Data

2024 - Proceedings of the 2024 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2024

De Luca, R.; Petti, M.; Guzzi, P. H.; Tieri, P.

Exploring Drug Repurposing Success Stories Through a Network-based Approach: Insights from a Case Study

2024 - Proceedings of the 2024 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2024

Pierini, E.; Mazza, L.; Petti, M.; Tieri, P.

NIAPU: Network-Informed Adaptive Positive-Unlabeled learning for disease gene identification

2023 - BIOINFORMATICS

Stolfi, Paola; Mastropietro, Andrea; Pasculli, Giuseppe; Vergni, Davide; Tieri, Paolo

Prunus Knotted-like genes. Genome-wide analysis, transcriptional response to Cytokinin in micropropagation, and rootstock transformation

2023 - INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Testone, Giulio; Caboni, Emilia; D'Angeli, Simone; Altamura, Maria Maddalena; Giannino, Donato

DNA Damage Response Gene Signature as Potential Treatment Markers for Oral Squamous Cell Carcinoma

2023 - INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Pomella, Silvia; Cassandri, Matteo; Melaiu, Ombretta; Marampon, Francesco; Gargari, Marco; Campanella, Vincenzo; Rota, Rossella; Barillari, Giovanni

XGDAG: explainable geneâdisease associations via graph neural networks

2023 - BIOINFORMATICS

Mastropietro, Andrea; DE CARLO, Gianluca; Anagnostopoulos, Aris

Exploring the landscape of tools and resources for the analysis of long non-coding RNAs

2023 - COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL

Ballarino, Monica; Pepe, Gerardo; Helmer-Citterich, Manuela; Palma, Alessandro

Bioinformatics analyses to identify molecular gene signatures associated with breast cancer phenotypes

2023 - Convegno Nazionale di Bioingegneria

Conte, F.; Fiscon, G.; Paci, P.

RNA-Based Strategies for Cancer Therapy: In Silico Design and Evaluation of ASOs for Targeted Exon Skipping

2023 - INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Pacelli, C.; Rossi, A.; Milella, M.; Colombo, T.; Le Pera, L.

Overview of bioinformatic tools to study viral infections

2023 - Proceedings - 2023 2023 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023

Zulian, V.; Garbuglia, A. R.; Fiscon, G.; Paci, P.

PSRTTCA: A new approach for improving the prediction and characterization of tumor T cell antigens using propensity score representation learning

2023 - COMPUTERS IN BIOLOGY AND MEDICINE

Charoenkwan, P.; Pipattanaboon, C.; Nantasenamat, C.; Hasan, M. M.; Moni, M. A.; Lio, P.; Shoombuatong, W.

SurvivalGAN: Generating Time-to-Event Data for Survival Analysis

2023 - Proceedings of Machine Learning Research

Norcliffe, A.; Cebere, B.; Imrie, F.; Lio, P.; van der Schaar, M.

Deep Learning Methods for Network Biology

2022 - Deep Learning In Biology and Medicine

Madeddu, Lorenzo; Stilo, Giovanni

Pandemic, epidemic, endemic: B cell repertoire analysis reveals unique anti-viral responses to SARS-CoV-2, Ebola and Respiratory Syncytial Virus

2022 - FRONTIERS IN IMMUNOLOGY

Alexander, Stewart; Emma, SinclaiR; Joseph Chi-Fung Ng, ; Joselli Silva OâHare, ; Audrey, Page; Serangeli, Ilaria; Christian, Margreitter; Federica, OrsenigO; Katherine, Longman; Cecile, Frampas; Catia, Costa; Holly-May, Lewis; Nora, Kasar; Bryan, Wu; David, Kipling; Peter JM Openshaw, ; Christopher, Chiu; J Kenneth Baillie, ; Scott, Janet T.; Semple, Malcolm G.; Bailey, Melanie J.; Franca, FraternalI; Dunn-Walters, Deborah K.

Ricerc@Sapienza

Pubblicazioni

Deciphering Social Behaviour: a Novel Biological Approach For Social Users Classification

Towards parsimonious generative modeling of RNA families

Unlearning regularization for Boltzmann machines

SHELLEY: Exploring Learning-Based Network Alignment on Biological Data

Exploring Drug Repurposing Success Stories Through a Network-based Approach: Insights from a Case Study

NIAPU: Network-Informed Adaptive Positive-Unlabeled learning for disease gene identification

Prunus Knotted-like genes. Genome-wide analysis, transcriptional response to Cytokinin in micropropagation, and rootstock transformation

DNA Damage Response Gene Signature as Potential Treatment Markers for Oral Squamous Cell Carcinoma

XGDAG: explainable geneâdisease associations via graph neural networks

Exploring the landscape of tools and resources for the analysis of long non-coding RNAs

Bioinformatics analyses to identify molecular gene signatures associated with breast cancer phenotypes

RNA-Based Strategies for Cancer Therapy: In Silico Design and Evaluation of ASOs for Targeted Exon Skipping

Overview of bioinformatic tools to study viral infections

PSRTTCA: A new approach for improving the prediction and characterization of tumor T cell antigens using propensity score representation learning

SurvivalGAN: Generating Time-to-Event Data for Survival Analysis

Deep Learning Methods for Network Biology

Pandemic, epidemic, endemic: B cell repertoire analysis reveals unique anti-viral responses to SARS-CoV-2, Ebola and Respiratory Syncytial Virus

Metaâomics: Challenges and Applications

Network Proximity-Based Drug Repurposing Strategy for Early and Late Stages of Primary Biliary Cholangitis

Boosting the Full Potential of PyMOL with Structural Biology Plugins

Introducing the The Mastery Rubric for Bioinformatics â a Professional Guide

Using the The Mastery Rubric for Bioinformatics â A professional guide

Differential Co-expression Network Analysis to Investigate Sexual Dimorphism in Colon Cancer

PROCONSUL: PRObabilistic exploration of CONnectivity Significance patterns for disease modULe discovery

NEPTUNE: A novel computational approach for accurate and large-scale identification of tumor homing peptides