Pubblicazioni

Structural Analysis of the SARS-CoV-2 Spike N-Terminal Domain Across Wild-Type and Recent Variants: A Comparative Study

2025 - PROTEINS

Quaranta, Miriana; Via, Allegra; Pascarella, Stefano

Computational evidences of a misfolding event in an aggregationâprone light chain preceding the formation of the nonânative pathogenic dimer

2024 - PROTEINS

Desantis, Fausta; Miotto, Mattia; Milanetti, Edoardo; Ruocco, Giancarlo; DI RIENZO, Lorenzo

Dynamical changes of SARS-CoV-2 spike variants in the highly immunogenic regions impact the viral antibodies escaping

2023 - PROTEINS

Di Rienzo, L.; Miotto, M.; Desantis, F.; Grassmann, G.; Ruocco, G.; Milanetti, E.

Exploring CCRL2 chemerin binding using accelerated molecular dynamics

2022 - PROTEINS

Bufano, M.; Laffranchi, M.; Sozzani, S.; Raimondo, D.; Silvestri, R.; Coluccia, A.

Crystal structure of Aspergillus fumigatus AroH, an aromatic amino acid aminotransferase

2021 - PROTEINS

Spizzichino, Sharon; Pampalone, Gioena; Dindo, Mirco; Bruno, Agostino; Romani, Luigina; CutruzzolÃ , Francesca; Zelante, Teresa; Pieroni, Marco; Cellini, Barbara; Giardina, Giorgio

Target highlights in CASP14: Analysis of models by structure providers

2021 - PROTEINS

Alexander, L. T.; Lepore, R.; Kryshtafovych, A.; Adamopoulos, A.; Alahuhta, M.; Arvin, A. M.; Bomble, Y. J.; Bottcher, B.; Breyton, C.; Chiarini, V.; Chinnam, N. B.; Chiu, W.; Fidelis, K.; Grinter, R.; Gupta, G. D.; Hartmann, M. D.; Hayes, C. S.; Heidebrecht, T.; Ilari, A.; Joachimiak, A.; Kim, Y.; Linares, R.; Lovering, A. L.; Lunin, V. V.; Lupas, A. N.; Makbul, C.; Michalska, K.; Moult, J.; Mukherjee, P. K.; Nutt, W.; Oliver, S. L.; Perrakis, A.; Stols, L.; Tainer, J. A.; Topf, M.; Tsutakawa, S. E.; Valdivia-Delgado, M.; Schwede, T.

Assessing the accuracy of contact and distance predictions in CASP14

2021 - PROTEINS

Ruiz-Serra, Victoria; Pontes, Camila; Milanetti, Edoardo; Kryshtafovych, Andriy; Lepore, Rosalba; Valencia, Alfonso

Target highlights in CASP13: Experimental target structures through the eyes of their authors

2019 - PROTEINS

Lepore, Rosalba; Kryshtafovych, Andriy; Alahuhta, Markus; Veraszto, Harshul A; Bomble, Yannick J; Bufton, Joshua C; Bullock, Alex N; Caba, Cody; Cao, Hongnan; Davies, Owen R; Desfosses, Ambroise; Dunne, Matthew; Fidelis, Krzysztof; Goulding, Celia W; Gurusaran, Manickam; Gutsche, Irina; Harding, Christopher J; Hartmann, Marcus D; Hayes, Christopher S; Joachimiak, Andrzej; Leiman, Petr G; Loppnau, Peter; Lovering, Andrew L; Lunin, Vladimir V; Michalska, Karolina; Mir-Sanchis, Ignacio; Mitra, A K; Moult, John; Phillips, George N; Pinkas, Daniel M; Rice, Phoebe A; Tong, Yufeng; Topf, Maya; Walton, Jonathan D; Schwede, Torsten

A novel bacterial l-arginine sensor controlling c-di-GMP levels in Pseudomonas aeruginosa

2018 - PROTEINS

Paiardini, A.; Mantoni, F.; Giardina, G.; Paone, A.; Janson, G.; Leoni, L.; Rampioni, G.; CutruzzolÃ , F.; Rinaldo, S.

Critical assessment of methods of protein structure prediction: Progress and new directions in round XI

2016 - PROTEINS

Moult, John; Fidelis, Krzysztof; Kryshtafovych, Andriy; Schwede, Torsten; Tramontano, Anna

New encouraging developments in contact prediction: Assessment of the CASP11 results

2015 - PROTEINS

Monastyrskyy, Bohdan; D'Andrea, Daniel; Fidelis, Krzysztof; Tramontano, Anna; Kryshtafovych, Andriy

Methods of model accuracy estimation can help selecting the best models from decoy sets: Assessment of model accuracy estimations in CASP11

2015 - PROTEINS

Kryshtafovych, Andriy; Barbato, Alessandro; Monastyrskyy, Bohdan; Fidelis, Krzysztof; Schwede, Torsten; Tramontano, Anna

X-ray crystal structures of an orally available aminopeptidase inhibitor, Tosedostat, bound to anti-malarial drug targets PfA-M1 and PfA-M17

2015 - PROTEINS

Drinkwater, Nyssa; Bamert, Rebecca S.; Sivaraman, Komagal Kannan; Paiardini, Alessandro; Mcgowan, Sheena

Characterization of the differences in the cyclopiazonic acid binding mode to mammalian and P. Falciparum Ca2+ pumps: a computational study

2015 - PROTEINS

Di Marino, Daniele; D'Annessa, Ilda; Coletta, Andrea; Via, Allegra; Tramontano, Anna