Pubblicazioni

gRNAde: A Geometric Deep Learning Pipeline for 3D RNA Inverse Design

2025 - Methods in Molecular Biology

Joshi, C. K.; Lio, P.

Recent Exploration of Solid Cancer Biomarkers Hidden Within Urine or Blood Exosomes That Provide Fundamental Information for Future Cancer Diagnostics

2025 - DIAGNOSTICS

Hara, Tomoaki; Meng, Sikun; Alshammari, Aya Hasan; Hatakeyama, Hideyuki; Arao, Yasuko; Saito, Yoshiko; Inoue, Kana; di Luccio, Eric; Vecchione, Andrea; Hirotsu, Takaaki; Ishii, Hideshi

Prediction of protein-RNA interactions from single-cell transcriptomic data

2024 - NUCLEIC ACIDS RESEARCH

Fiorentino, Jonathan; Armaos, Alexandros; Colantoni, Alessio; Tartaglia, Gian

CyCoNP lncRNA establishes cis and trans RNA-RNA interactions to supervise neuron physiology

2024 - NUCLEIC ACIDS RESEARCH

Desideri, Fabio; Grazzi, Alessandro; Lisi, Michela; Setti, Adriano; Santini, Tiziana; Colantoni, Alessio; Proietti, Gabriele; Carvelli, Andrea; Tartaglia, Gian Gaetano; Ballarino, Monica; Bozzoni, Irene

ALS-associated FUS mutation reshapes the RNA and protein composition of stress granules

2024 - NUCLEIC ACIDS RESEARCH

Mariani, Davide; Setti, Adriano; Castagnetti, Francesco; Vitiello, Erika; Stufera Mecarelli, Lorenzo; Di Timoteo, Gaia; Giuliani, Andrea; D'Angelo, Angelo; Santini, Tiziana; Perego, Eleonora; Zappone, Sabrina; Liessi, Nara; Armirotti, Andrea; Vicidomini, Giuseppe; Bozzoni, Irene

The PRALINE database: protein and Rna humAn singLe nucleotIde variaNts in condEnsates

2023 - BIOINFORMATICS

Vandelli, Andrea; Arnal Segura, Magdalena; Monti, Michele; Fiorentino, Jonathan; Broglia, Laura; Colantoni, Alessio; Sanchez de Groot, Natalia; Torrent Burgas, Marc; Armaos, Alexandros; Tartaglia, Gian Gaetano

Exploring the landscape of tools and resources for the analysis of long non-coding RNAs

2023 - COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL

Ballarino, Monica; Pepe, Gerardo; Helmer-Citterich, Manuela; Palma, Alessandro

Rio1 downregulates centromeric RNA levels to promote the timely assembly of structurally fit kinetochores

2023 - NATURE COMMUNICATIONS

Smurova, Ksenia; Damizia, Michela; Irene, Carmela; Stancari, Stefania; Berto, Giovanna; Perticari, Giulia; Iacovella, Maria Giuseppina; D'Ambrosio, Ilaria; Giubettini, Maria; Philippe, RÃ©ginald; Baggio, Chiara; Callegaro, Elisabetta; Casagranda, Andrea; Corsini, Alessandro; Polese, Vincenzo Gentile; Ricci, Anna; Dassi, Erik; De Wulf, Peter

A Plasma Circular RNA Profile Differentiates Subjects with Alzheimer's Disease and Mild Cognitive Impairment from Healthy Controls

2022 - INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Piscopo, Paola; Manzini, Valeria; Rivabene, Roberto; Crestini, Alessio; Le Pera, Loredana; Pizzi, Elisabetta; Veroni, Caterina; Talarico, Giuseppina; Peconi, Martina; Castellano, Anna Elisa; D'Alessio, Carmelo; Bruno, Giuseppe; Corbo, Massimo; Vanacore, Nicola; Lacorte, Eleonora

Multiple roles of m6A RNA modification in translational regulation in cancer

2022 - INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

FERNANDEZ RODRIGUEZ, Guillermo; Cesaro, Bianca; Fatica, Alessandro

The PDE4 Inhibitor Tanimilast Blunts Proinflammatory Dendritic Cell Activation by SARS-CoV-2 ssRNAs

2022 - FRONTIERS IN IMMUNOLOGY

Nguyen, H. O.; Schioppa, T.; Tiberio, L.; Facchinetti, F.; Villetti, G.; Civelli, M.; Del Prete, A.; Sozio, F.; Gaudenzi, C.; Passari, M.; Barbazza, I.; Sozzani, S.; Salvi, V.; Bosisio, D.

TGS1 mediates 2,2,7-trimethyl guanosine capping of the human telomerase RNA to direct telomerase dependent telomere maintenance

2022 - NATURE COMMUNICATIONS

Buemi, V.; Schillaci, O.; Santorsola, M.; Bonazza, D.; Broccia, P. V.; Zappone, A.; Bottin, C.; Dell'Omo, G.; Kengne, S.; Cacchione, S.; Raffa, G. D.; Piazza, S.; di Fagagna, F. A.; Benetti, R.; Cortale, M.; Zanconati, F.; Del Sal, G.; Schoeftner, S.

Kinetics of the B- and T-Cell Immune Responses After 6 Months From SARS-CoV-2 mRNA Vaccination in Patients With Rheumatoid Arthritis

2022 - FRONTIERS IN IMMUNOLOGY

Farroni, C.; Picchianti Diamanti, A.; Aiello, A.; Nicastri, E.; Lagana, B.; Agrati, C.; Castilletti, C.; Meschi, S.; Colavita, F.; Cuzzi, G.; Casetti, R.; Grassi, G.; Petrone, L.; Vanini, V.; Salmi, A.; Repele, F.; Altera, A. M. G.; Maffongelli, G.; Corpolongo, A.; Salemi, S.; Di Rosa, R.; Nalli, G.; Sesti, G.; Vaia, F.; Puro, V.; Goletti, D.

Serum albumin and nucleic acids biodistribution. From molecular aspects to biotechnological applications

2022 - IUBMB LIFE

Vita, G. M.; De Simone, G.; De Marinis, E.; Nervi, C.; Ascenzi, P.; di Masi, A.

StaRTrEK:in silico estimation of RNA half-lives from genome-wide time-course experiments without transcriptional inhibition

2022 - BMC BIOINFORMATICS

Conte, F.; Papa, F.; Paci, P.; Farina, L.

MALAT1-dependent hsa_circ_0076611 regulates translation rate in triple-negative breast cancer

2022 - COMMUNICATIONS BIOLOGY

Turco, Chiara; Esposito, Gabriella; Iaiza, Alessia; Goeman, Frauke; Benedetti, Anna; Gallo, Enzo; Daralioti, Theodora; Perracchio, Letizia; Sacconi, Andrea; Pasanisi, Patrizia; Muti, Paola; Pulito, Claudio; Strano, Sabrina; Ianniello, Zaira; Fatica, Alessandro; Forcato, Mattia; Fazi, Francesco; Blandino, Giovanni; Fontemaggi, Giulia

Small interfering RNAs in tendon homeostasis

2021 - BRITISH MEDICAL BULLETIN

Gargano, Giuseppe; Oliviero, Antonio; Oliva, Francesco; Maffulli, Nicola

Therapeutic Implications of miRNAs for Muscle-Wasting Conditions

2021 - CELLS

Yedigaryan, Laura; Sampaolesi, Maurilio

Rna flow cytometry for the study of t cell metabolism

2021 - INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Rossi, A.; Pacella, I.; Piconese, S.

OxDNA.org: A public webserver for coarse-grained simulations of DNA and RNA nanostructures

2021 - NUCLEIC ACIDS RESEARCH

Poppleton, E.; Romero, R.; Mallya, A.; Rovigatti, L.; Sulc, P.

Methylosystem for cancer sieging strategy

2021 - CANCERS

Tatekawa, S.; Ofusa, K.; Chijimatsu, R.; Vecchione, A.; Tamari, K.; Ogawa, K.; Ishii, H.

Decoding human cancer with whole genome sequencing: a review of PCAWG Project studies published in February 2020

2021 - CANCER METASTASIS REVIEWS

Giunta, S.

catRAPID omics v2.0: going deeper and wider in the prediction of proteinâRNA interactions

2021 - NUCLEIC ACIDS RESEARCH

Armaos, Alexandros; Colantoni, Alessio; Proietti, Gabriele; Rupert, Jakob; Tartaglia, Gian Gaetano

m6A RNA methylation and beyond - the epigenetic machinery and potential treatment options

2021 - DRUG DISCOVERY TODAY

Garbo, Sabrina; Zwergel, Clemens; Battistelli, Cecilia

FUS ALS-causative mutations impair FUS autoregulation and splicing factor networks through intron retention

2020 - NUCLEIC ACIDS RESEARCH

Humphrey, Jack; Birsa, Nicol; Milioto, Carmelo; McLaughlin, Martha; Ule, Agnieszka M; Robaldo, David; Eberle, Andrea B; KrÃ¤uchi, Rahel; Bentham, Matthew; Brown, Anna-Leigh; Jarvis, Seth; Bodo, Cristian; Garone, Maria G; Devoy, Anny; Soraru, Gianni; Rosa, Alessandro; Bozzoni, Irene; Fisher, Elizabeth M C; MÃ¼hlemann, Oliver; Schiavo, Giampietro; Ruepp, Marc-David; Isaacs, Adrian M; Plagnol, Vincent; Fratta, Pietro