Pubblicazioni

Genome biology of long non-coding RNAs in humans: A virtual karyotype

2025 - COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL
Palma, A.; Buonaiuto, G.; Ballarino, M.; Laneve, P.

Osmolyte-induced protein stability changes explained by graph theory

2024 - COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL
Miotto, Mattia; Warner, Nina; Ruocco, Giancarlo; Tartaglia, Gian Gaetano; Scherman, Oren A.; Milanetti, Edoardo

Structured population balances to support microalgae-based processes: Review of the state-of-art and perspectives analysis

2023 - COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL
Usai, A.; Theodoropoulos, C.; Di Caprio, F.; Altimari, P.; Cao, G.; Concas, A.

Monomeric and dimeric states of human ZO1-PDZ2 are functional partners of the SARS-CoV-2 E protein

2023 - COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL
Giacon, Noah; Lo Cascio, Ettore; Davidson, Darcy S.; Polêto, Marcelo D.; Lemkul, Justin A.; Pennacchietti, Valeria; Pagano, Livia; Zamparelli, Carlotta; Toto, Angelo; Arcovito, Alessandro

Exploring the landscape of tools and resources for the analysis of long non-coding RNAs

2023 - COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL
Ballarino, Monica; Pepe, Gerardo; Helmer-Citterich, Manuela; Palma, Alessandro

Molecular dynamics analysis of superoxide dismutase 1 mutations suggests decoupling between mechanisms underlying ALS onset and progression

2023 - COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL
Kalia, Munishikha; Miotto, Mattia; Ness, Deborah; Opie-Martin, Sarah; Spargo, Thomas P.; DI RIENZO, Lorenzo; Biagini, Tommaso; Petrizzelli, Francesco; Al Khleifat, Ahmad; Kabiljo, Renata; Mazza, Tommaso; Ruocco, Giancarlo; Milanetti, Edoardo; JB Dobson, Richard; Al-Chalabi, Ammar; Iacoangeli, Alfredo

Magnetic resonance imaging-based prediction models for tumor stage and cervical lymph node metastasis of tongue squamous cell carcinoma

2023 - COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL
Vidiri, Antonello; Marzi, Simona; Piludu, Francesca; Lucchese, Sonia; Dolcetti, Vincenzo; Polito, Eleonora; Mazzola, Francesco; Marchesi, Paolo; Merenda, Elisabetta; Sperduti, Isabella; Pellini, Raul; Covello, Renato

Computational structural-based GPCR optimization for user-defined ligand: Implications for the development of biosensors

2023 - COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL
DI RIENZO, Lorenzo; Miotto, Mattia; Milanetti, Edoardo; Ruocco, Giancarlo

Evidence of a SARS-CoV-2 double Spike mutation D614G/S939F potentially affecting immune response of infected subjects

2022 - COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL
Donzelli, S.; Spinella, F.; di Domenico, E. G.; Pontone, M.; Cavallo, I.; Orlandi, G.; Iannazzo, S.; Ricciuto, G. M.; ISG Virology Covid, Team; Pellini, R.; Muti, P.; Strano, S.; Ciliberto, G.; Ensoli, F.; Zapperi, S.; La Porta, C. A. M.; Blandino, G.; Morrone, A.; Pimpinelli, F.

KDM6A missense variants hamper H3 histone demethylation in lung squamous cell carcinoma

2022 - COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL
Biagini, Tommaso; Petrizzelli, Francesco; Bianco, SALVATORE DANIELE; Liorni, Niccolo'; Napoli, Alessandro; Castellana, Stefano; Luigi Vescovi, Angelo; Carella, Massimo; Caputo, Viviana; Mazza, Tommaso

Identifying novel SMYD3 interactors on the trail of cancer hallmarks

2022 - COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL
Fasano, Candida; LEPORE SIGNORILE, Martina; DE MARCO, Katia; Forte, Giovanna; Sanese, Paola; Grossi, Valentina; Simone, Cristiano

2D Zernike polynomial expansion: Finding the protein-protein binding regions

2021 - COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL
Milanetti, E.; Miotto, M.; Di Rienzo, L.; Monti, M.; Gosti, G.; Ruocco, G.

Structural determinants driving the binding process between PDZ domain of wild type human PALS1 protein and SLiM sequences of SARS-CoV E proteins

2021 - COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL
Lo Cascio, E.; Toto, A.; Babini, G.; De Maio, F.; Sanguinetti, M.; Mordente, A.; Della Longa, S.; Arcovito, A.

Modelling of SHMT1 riboregulation predicts dynamic changes of serine and glycine levels across cellular compartments

2021 - COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL
Monti, Michele; Guiducci, Giulia; Paone, Alessio; Rinaldo, Serena; Giardina, Giorgio; Liberati, Francesca Romana; Cutruzzolá, Francesca; Tartaglia, Gian Gaetano

Zeta-carbonic anhydrases show CS2 hydrolase activity: A new metabolic carbon acquisition pathway in diatoms?

2021 - COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL
Alterio, V; Langella, E; Buonanno, M; Esposito, D; Nocentini, A; Berrino, E; Bua, S; Polentarutti, M; Supuran, Ct; Monti, Sm; De Simone, G.

Computational optimization of angiotensin-converting enzyme 2 for SARS-CoV-2 Spike molecular recognition

2021 - COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL
Di Rienzo, L.; Monti, M.; Milanetti, E.; Miotto, M.; Boffi, A.; Tartaglia, G. G.; Ruocco, G.

AI applications in functional genomics

2021 - COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL
Caudai, Claudia; Galizia, Antonella; Geraci, Filippo; Le Pera, Loredana; Morea, Veronica; Salerno, Emanuele; Via, Allegra; Colombo, Teresa

Unraveling the molecular basis of host cell receptor usage in SARS-CoV-2 and other human pathogenic β-CoVs

2021 - COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL
Pontes, Camila; Ruiz-Serra, Victoria; Lepore, Rosalba#; Valencia, Alfonso#; #These authors contributed, Equally

Mechanisms of pathogenesis of missense mutations on the KDM6A-H3 interaction in type 2 Kabuki Syndrome

2020 - COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL
Petrizzelli, F.; Biagini, T.; Barbieri, A.; Parca, L.; Panzironi, N.; Castellana, S.; Caputo, V.; Vescovi, A. L.; Carella, M.; Mazza, T.

A novel strategy for molecular interfaces optimization: the case of ferritin-transferrin receptor interaction

2020 - COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL
Di Rienzo, L.; Milanetti, E.; Testi, C.; Montemiglio, L. C.; Baiocco, P.; Boffi, A.; Ruocco, G.

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